Publications (download papers from here )

Journal  

  1. Jingwu He and Alex Zelikovsky, "Informative SNP Selection Based on SNP Prediction" ， IEEE Transactions on NanoBioscience special issue on Computational NanoBioscience , 6(1), 2007, pp. 60-67. (.pdf)
  2. Jingwu He and Alex Zelikovsky, "MLS-tagging: Genotype Tagging Based on Multivariate Linear Regression" , Bioinformatics , 22(20), pp 2558 - 2561 , 2006 (.pdf)
  3. Jingwu He, Kelly Westbrooks and Alex Zelikovsky, "Linear Reduction Method for Predictive and Informative Tag SNP Selection", International Journal on Bioinformatics Research and Applications, Vol. 1, No. 3, 249-260, 2005. (.pdf)
  4. Dumitru Brinza, Jingwu He, Weidong Mao and Alex Zelikovsky, "Family Trio Phasing and Missing Data Recovery", International Journal on Bioinformatics Research and Applications, Vol. 1, No. 2, 221-229, 2005.  (.pdf)

Book Chapter

  1. Dumitru Brinza, Jingwu He and Alex Zelikovsky, (2007) "Optimization Methods for Genotype Data Analysis in Epidemiological", book chapter in Bioinformatics Algorithms: Techniques and Applications, i n Press.

Conferences/Workshops

  1. Dumitru Brinza, Jingwu He and Alex Zelikovsky, "Combinatorial Search Methods for Multi-SNP Disease Association", Proc. International Conf. of the IEEE Engineering in Medicine and Biology (EMBC'06), September 2006, pp. 5802-5805
  2. Jingwu He and Alex Zelikovsky, "Multiple Linear Regression for Index SNP Selection on Unphased Genotypes", Proc. International Conf. of the IEEE Engineering in Medicine and Biology (EMBC'06), September 2006, pp. 5759-5762
  3. Jingwu He, Jun Zhang and Alex Zelikovsky, "Haplotype Tagging based on SVM SNP Prediction", Proc. IEEE Intl Conf on Granular Computing (GRC 2006), May 2006, pp. 758-761
  4. Jingwu He and Alex Zelikovsky, "Tag SNP Selection Based on Multivariate Linear Regression", Proc. of Intl Conf on Computational Science (ICCS 2006), May 2006, LNCS 3992, pp. 750-757
  5. Weidong Mao, Jingwu He, Dumitru Brinza and Alex Zelikovsky, "A Combinatorial Method for Predicting Genetic Susceptibility to Complex Diseases", Proceedings of International Conference of the IEEE Engineering in Medicine and Biology (EMBC'05) , September 2005, 1832-1835.
  6. Dumitru Brinza, Jingwu He, Weidong Mao and Alex Zelikovsky , " Phasing and Missing data recovery in Family Trios" , Proceedings of ICCS 2005 LNCS 3515, June 2005, 1011-1019.
  7. Jingwu He, Kelly Westbrooks and Alex Zelikovsky, "Linear Independent Tagging of Genotypes", Poster Paper. The Ninth Annual Conference on Research in Computational Molecular Biology (Recomb'05), May 2005, 125-126.
  8. Dumitru Brinza, Jingwu He, Weidong Mao, and Alex Zelikovsky, "Family Trio Phasing and Missing Recovery", Poster Paper. The Ninth Annual Conference on Research in Computational Molecular Biology (Recomb'05), May 2005, 47-48.
  9. Weidong Mao, Jingwu He, Dumitru Brinza and Alex Zelikovsky, "Graph Prediction Methods for Inherited Disease", Poster Paper. The Ninth Annual Conference on Research In Computational Molecular Biology (Recomb'05), May 2005, 223-224.
  10. Jingwu He and Alex Zelikovsky, " Linear Reduction Methods for Tag SNP Selection" , Proceedings of International Conference of the IEEE Engineering in Medicine and Biology (EMBC'04), September 2004, 2840-2843. Regional Finalist Award for student paper competition and Travel Grant ( 10 finalists out of 600 competitors ) .
  11. Jingwu He and Alex Zelikovsky, "Linear Reduction for Haplotype Inference", Proceedings of Workshop on Algorithms in Bioinformatics (WABI'04), September 2004, Lecture Notes in Bioinformatics (LNBI) 3240, 242-253.
  12. Sushil K. Prasad, Vijay Madisetti, Raj Sunderraman, Erdogan Dogdu, Yi Pan, Anu Bourgeois, Michael Weeks, Alex Zelikovsky, Sham Navathe, Yanqing Zhang, Saied Belkasim, Raghupati Sivakumar and Students: Janaka Balasooriya, Pooja Bhatia, Wei Chen, Swetha Desetty, Brian Gamulkiewicz, Arthi Hariharan, Jingwu He, Yuanchen He, Praveena Jayanthi, Bing Liu, Hui Liu, Praveen Madiraju, Srilaxmi Malladi, Wissam Ramlawi, Feng Tan, Yuchun Tang, Hui Wang, Wei Zhong. "A Middleware for Collaborative Applications on System on Devices (SyD) ", Demo and Poster paper in The International Conference on Mobile Systems, Applications, and Services (MobiSys) , San Francisco, May 2003.

GEDC (formerly YAMACRAW) Publications::

I was an active member of the Georgia Electronic Center (GEDC) – Georgia State University (GSU) alliance project from 2002-present. GEDC supports world-class research, active and solution-oriented industry collaboration, intellectual property generation and revenue generating commercialization efforts with more than 400 world class researchers. GEDC publishes unrefereed documents (poster, abstract and demo) twice a year in their Industry Advisory Board Conference

  1. Jingwu He and Erdogan Dogdu. "Syd Listener: A Listener Module for Distributed Applications over Mobile Devices", poster paper and Demo, Yamacraw Industry Advisory Board (IAB) Conference, Atlanta, Georgia, April 2004.
  2. Srilaxmi Malladi, Praveen Madiraju, Jingwu He, Navin Vishwanath, Sushil K. Prasad, Raj Sunderraman and Anu Bourgeois. "A Calendar Implementation for Mobile Devices Using SyD Technology", poster paper, Yamacraw Industry Advisory Board (IAB) Conference, Atlanta, Georgia, April 2004.
  3. Jingwu He, Shipa Panaganti, Bin Liu, Erdogan Dogdu, and Sushil K. Prasad. "A Listener Module for Distributed Applications over Mobile Devices", poster Paper, Yamacraw Industry Advisory Board (IAB) Conference, Atlanta, Georgia, April 2003.
  4. Jingwu He and Raj Sunderraman . "Personal Stock Portfolio Management System on iPaq", poster paper, Yamacraw Industry Advisory Board (IAB) Conference, Atlanta, Georgia, October 2002
  5. Pooja Bhatia, Jingwu He, Raj Sunderraman, and Sushil K. Prasad. "XML-based Inter-device Communication in SyD", poster paper, Yamacraw Industry Advisory Board (IAB) Conference, Atlanta, Georgia, October 2002.
  6. Erdogan Dogdu, Sushil K. Prasad, Raj Sunderraman, Yi Pan, Anu Bourgeois, Michael Weeks, Alex Zelikovsky, Yanqing Zhang, Saied Belkasim and Students: Janaka Balasooriya, Pooja Bhatia, Wei Chen, Swetha Desetty, Brian Gamulkiewicz, Arthi Hariharan, Jingwu He, Yuanchen He, Praveena Jayanthi, Bing Liu, Hui Liu, Praveen Madiraju, Srilaxmi Malladi, Wissam Ramlawi, Feng Tan, Yuchun Tang, Hui Wang, Wei Zhong. "SyD Implementation: A Software Engineering Case Study", Poster Paper, Yamacraw Industry Advisory Board Conference, Atlanta, October, 2002

Provisional Patents:

  1. Sushil K. Prasad, Vijay Madisetti, Raj Sunderraman, Erdogan Dogdu, Yi Pan, Anu Bourgeois, Michael Weeks, Alex Zelikovsky, Sham Navathe, Yanqing Zhang, Saied Belkasim, Raghupati Sivakumar and Students: Janaka Balasooriya, Pooja Bhatia, Wei Chen, Swetha Desetty, Brian Gamulkiewicz, Arthi Hariharan, Jingwu He, Yuanchen He, Praveena Jayanthi, Bing Liu, Hui Liu, Praveen Madiraju, Srilaxmi Malladi, Wissam Ramlawi, Feng Tan, Yuchun Tang, Hui Wang, Wei Zhong. SyD Kernel Design and Implementation, Provisional Patent filed, October, 2002.
  2. Sushil K. Prasad, Vijay Madisetti, Raj Sunderraman, Erdogan Dogdu, Yi Pan, Anu Bourgeois, Michael Weeks, Alex Zelikovsky, Sham Navathe, Yanqing Zhang, Saied Belkasim, Raghupati Sivakumar and Students: Janaka Balasooriya, Pooja Bhatia, Wei Chen, Swetha Desetty, Brian Gamulkiewicz, Arthi Hariharan, Jingwu He, Yuanchen He, Praveena Jayanthi, Bing Liu, Hui Liu, Praveen Madiraju, Srilaxmi Malladi, Wissam Ramlawi, Feng Tan, Yuchun Tang, Hui Wang, and Wei Zhong. How to Rapidly Develop a SyD Application Provisional Patent filed, October, 2002.

Oral Presentations And Demos:

  1.  "Linear Reduction Methods for Tag SNP Selection," Proc. International Conf. of the IEEE Engineering in Medicine and Biology (EMBC'04), September 2004.
  2. "Syd Listener: A Listener Module for Distributed Applications over Mobile Devices", Demo, Yamacraw Industry Advisory Board (IAB) Conference, Atlanta, Georgia, October, 2002
  3. "Implementing a Calendar Application using SyD kernel API’s", Presentation and Demo, Armstrong Atlantic State university, Savannah, Georgia, March 6, 2003
  4. "Implementing a Mobile Calendar System using SyD Kernel APIs", Demo, Yamacraw Industry Advisory Board (IAB) Conference, Atlanta, Georgia, October, 2002
     


Author: Jim Jingwu He